Estudo Teórico da Interação entre o Íon Metálico Cd2+ com as Bases Isoladas de ADN

Autores

  • Débora Ilario da Silva Gomes Universidade Federal Fluminense image/svg+xml
  • Lilian Weitzel Coelho Paes Universidade Federal Fluminense image/svg+xml

DOI:

https://doi.org/10.22481/exon.v13i1.20559

Palavras-chave:

Afinidade íon metálico, Bases Nitrogenadas, ADN, TFD

Resumo

As interações entre cátions metálicos e ácidos nucléicos desempenham um papel importante em muitos  processos biológicos. A energia de interação do cátion Cd2+ com as bases nitrogenadas adenina, guanina,  citosina e timina foram analisadas, usando o método TFD com o funcional híbrido B3LYP e conjuntos de  base 6–311++G (d, p) para os átomos leves e LANL2DZ para o íon metálico, o efeito de solvatação foi  incorporado utilizando o modelo de solvatação contínua (CPCM). As geometrias dos complexos,  afinidades de íon metálico e entalpias de reação os complexos foram determinados. A afinidade do íon  cádmio com todas as bases nitrogenadas apresentam a seguinte ordem: C > G > A > T. Os resultados  mostraram que a coordenação bidentada no caso da citosina é o fator principal que leva a maior  estabilidade e como consequência a maior afinidade pelo íon cádmio. A variação da AIM calculadas  apresentou uma boa correlação com a energia de interação, variação carga no íon cádmio, e  consequentemente a transferência de carga nos complexos, como também com diferença de energia  HOMO-LUMO.

Downloads

Não há dados estatísticos.

Referências

H. Ali, E. Khan, I. Ilahi, Environmental Chemistry and Ecotoxicology of Hazardous Heavy Metals: Environmental Persistence, Toxicity, and Bioaccumulation, Journal of Chemistry, 2019 (2019) 6730305.

Z.L. He, X.E. Yang, P.J. Stoffella, Trace elements in agroecosystems and impacts on the environment, Journal of trace elements in medicine and biology: organ of the Society for Minerals and Trace Elements (GMS), 19 (2005) 125-140.

J. Briffa, E. Sinagra, R. Blundell, Heavy metal pollution in the environment and their toxicological effects on humans, Heliyon, 6 (2020) e04691.

C.M.d. Freitas, C. Barcellos, L. Heller, Z.M.P.d. Luz, Desastres em barragens de mineração: lições do passado para reduzir riscos atuais e futuros, Epidemiologia e Serviços de Saúde, 28 (2019).

P.B. Tchounwou, A.B. Ishaque, J. Schneider, Cytotoxicity and transcriptional activation of stress genes in human liver carcinoma cells (HepG2) exposed to cadmium chloride, Molecular and cellular biochemistry, 222 (2001) 21-28.

B. Wang, Y. Du, Cadmium and its neurotoxic effects, Oxidative medicine and cellular longevity, 2013 (2013) 898034.

M. Nordberg, B. Winblad, H. Basun, Cadmium concentration in blood in an elderly urban population, Biometals, 13 (2000) 311-317.

M.P. Waalkes, Cadmium carcinogenesis in review, J Inorg Biochem, 79 (2000) 241-244.

P. Joseph, T.K. Muchnok, M.L. Klishis, J.R. Roberts, J.M. Antonini, W.-Z. Whong, T.-m. Ong, Cadmium-Induced Cell Transformation and Tumorigenesis Are Associated with Transcriptional Activation of c-fos, c-jun, and c-myc Proto-Oncogenes: Role of Cellular Calcium and Reactive Oxygen Species, Toxicological Sciences, 61 (2001) 295-303.

E. López, S. Figueroa, M.J. Oset-Gasque, M.P. González, Apoptosis and necrosis: two distinct events induced by cadmium in cortical neurons in culture, British Journal of Pharmacology, 138 (2003) 901-911.

J.F. Gonçalves, V.L. Dressler, C.E. Assmann, V.M.M. Morsch, M.R.C. Schetinger, Chapter Three - Cadmium neurotoxicity: From its analytical aspects to neuronal impairment, in: M. Aschner, L.G. Costa (Eds.) Advances in Neurotoxicology, Academic Press2021, pp. 81-113.

E.M. Martin, R.C. Fry, Environmental Influences on the Epigenome: Exposure- Associated DNA Methylation in Human Populations, Annual Review of Public Health, 39 (2018) 309-333.

H.W. Tan, Z.L. Liang, Y. Yao, D.D. Wu, H.Y. Mo, J. Gu, J.F. Chiu, Y.M. Xu, A.T.Y. Lau, Lasting DNA Damage and Aberrant DNA Repair Gene Expression Profile Are Associated with Post Chronic Cadmium Exposure in Human Bronchial Epithelial Cells, Cells, 8 (2019).

S.M. Hashemianzadeh, S. Faraji, A.H. Amin, S. Ketabi, Theoretical Study of the Interactions between Isolated DNA Bases and Various Groups IA and IIA Metal Ions by Ab Initio Calculations, Monatshefte für Chemie - Chemical Monthly, 139 (2008) 89-100.

F. Meng, F. Wang, X. Zhao, A.F. Jalbout, Guanine tetrad interacting with divalent metal ions (M=Fe2+, Co2+, Ni2+, Cu2+ and Zn2+): A density functional study, Journal of Molecular Structure: THEOCHEM, 854 (2008) 26-30.

O. Gutten, I. Beššeová, L. Rulíšek, Interaction of Metal Ions with Biomolecular Ligands: How Accurate Are Calculated Free Energies Associated with Metal Ion Complexation?, The Journal of Physical Chemistry A, 115 (2011) 11394-11402.

T. Marino, N. Russo, M. Toscano, Gas-phase metal ion (Li+, Na+, Cu+) affinities of glycine and alanine, Journal of inorganic biochemistry, 79 (2000) 179-185.

S. Bagchi, D. Mandal, D. Ghosh, A.K. Das, Density functional theory study of interaction, bonding and affinity of group IIb transition metal cations with nucleic acid bases, Chemical Physics, 400 (2012) 108-117.

A. Fattahi, M. Shakorian Fard Jahromi, DFT Study of the Interaction of Thymine with Cu+ and Zn2+, Scientia Iranica, 16 (2009) -.

J. Šponer, M. Sabat, L. Gorb, J. Leszczynski, B. Lippert, P. Hobza, The Effect of Metal Binding to the N7 Site of Purine Nucleotides on Their Structure, Energy, and Involvement in Base Pairing, The Journal of Physical Chemistry B, 104 (2000) 7535-7544.

J. Muñoz, J. Sponer, P. Hobza, M. Orozco, F.J. Luque, Interactions of Hydrated Mg2+ Cation with Bases, Base Pairs, and Nucleotides. Electron Topology, Natural Bond Orbital, Electrostatic, and Vibrational Study, The Journal of Physical Chemistry B, 105 (2001) 6051-6060.

M. Kabeláč, P. Hobza, Na+, Mg2+, and Zn2+ Binding to All Tautomers of Adenine, Cytosine, and Thymine and the Eight Most Stable Keto/Enol Tautomers of Guanine: A Correlated ab Initio Quantum Chemical Study, The Journal of Physical Chemistry B, 110 (2006) 14515-14523.

M.J. Burkitt, [7] Copper-DNA adducts, Methods in Enzymology, Academic Press1994, pp. 66-79.

J.H. Dawson, A Review of: “Metal Ions in Biological Systems, Volume 12, Properties of Copper H. Sigel, Editor, xx + 353 pages, Marcel Dekker, Inc., New York and Basel, 1981. $57.50.”, Synthesis and Reactivity in Inorganic and Metal-Organic Chemistry, 14 (1984) 431-432.

S.V. Kornilova, P. Miskovsky, A. Tomkova, L.E. Kapinos, E.V. Hackl, V.V. Andrushchenko, D.N. Grigoriev, Y.P. Blagoi, Vibrational spectroscopic studies of the divalent metal ion effect on DNA structural transitions, Journal of Molecular Structure, 408-409 (1997) 219-223.

M.J. Frisch, G.W. Trucks, H.B. Schlegel, G.E. Scuseria, M.A. Robb, J.R. Cheeseman, G.B. Scalmani, V.; Mennucci, B.; Petersson, G. A.; Nakatsuji, H.; Caricato, M.; Li, X.; Hratchian, H. P.; Izmaylov, A. F.; Bloino, J.; Zheng, G.; Sonnenberg, J. L.; Hada, M.; Ehara, M.; Toyota, K.; Fukuda, R.; Hasegawa, J.; Ishida, M.; Nakajima, T.; Honda, Y.; Kitao, O.; Nakai, H.; Vreven, T.; Montgomery, J. A., Jr.; Peralta, J. E.; Ogliaro, F.; Bearpark, M.; Heyd, J. J.; Brothers, E.; Kudin, K. N.; Staroverov, V. N.; Kobayashi, R.; Normand, J.; Raghavachari, K.; Rendell, A.; Burant, J. C.; Iyengar, S. S.; Tomasi, J.; Cossi, M.; Rega, N.; Millam, J. M.; Klene, M.; Knox, J. E.; Cross, J. B.; Bakken, V.; Adamo, C.; Jaramillo, J.; Gomperts, R.; Stratmann, R. E.; Yazyev, O.; Austin, A. J.; Cammi, R.; Pomelli, C.; Ochterski, J. W.; Martin, R. L.; Morokuma, K.; Zakrzewski, V. G.; Voth, G. A.; Salvador, P.; Dannenberg, J. J.; Dapprich, S.; Daniels, A. D.; Farkas, Ö.; Foresman, J. B.; Ortiz, J. V.; Cioslowski, J.; Fox, D. J., Gaussian 09w, Wallingford CT., 2009.

C. Lee, W. Yang, R.G. Parr, Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density, Physical review. B, Condensed matter, 37 (1988) 785-789.

A.D. Becke, A new mixing of Hartree–Fock and local density‐functional theories, The Journal of Chemical Physics, 98 (1993) 1372-1377.

V. Saravanan, A. Rajamani, V. Subramaniam, S. Ramasamy, Interaction of (G4)2 and (X4)2 DNA quadruplexes with Cu+, Ag+ and Au+ metal cations: a quantum chemical calculation on structural, energetic and electronic properties, Structural Chemistry, 31 (2020) 465-484.

P.C. Hariharan, J.A. Pople, The influence of polarization functions on molecular orbital hydrogenation energies, Theoretica chimica acta, 28 (1973) 213-222.

J. Šponer, J.V. Burda, M. Sabat, J. Leszczynski, P. Hobza, Interaction between the Guanine−Cytosine Watson−Crick DNA Base Pair and Hydrated Group IIa (Mg2+, Ca2+, Sr2+, Ba2+) and Group IIb (Zn2+, Cd2+, Hg2+) Metal Cations, The Journal of Physical Chemistry A, 102 (1998) 5951-5957.

H.M.I. Hasan, A.I. Yahiya, S.S. Hassan, M.M. Salama, Biological Study of Transition Metal Complexes with Adenine Ligand, Proceedings, 41 (2019) 77.

B. Lippert, Multiplicity of metal ion binding patterns to bases nitrogenadas, Coordination Chemistry Reviews, 200-202 (2000) 487-516.

Y. Zhang, K. Huang, The influence of the hydrated metal cations binding to adenine-N7 or adenine N3 on the hydrogen bonding in adenine–thymine base pair: A comparative study, Journal of Molecular Structure: THEOCHEM, 822 (2007) 57-64.

S.R. Trifunović, V.D. Miletić, V.V. Jevtić, A. Meetsma, Z.D. Matović, Nickel(ii) in chelate N2O2 environment. DFT approach and in-depth molecular orbital and configurational analysis, Dalton Transactions, 42 (2013) 13357-13368.

S. Kaviani, M. Izadyar, M.R. Housaindokht, DFT investigation on the selective complexation of Fe(3+) and Al(3+) with hydroxypyridinones used for treatment of the aluminium and iron overload diseases, Journal of molecular graphics & modelling, 80 (2018) 182-189.

H. Sigel, Interactions of metal ions with nucleotides and nucleic acids and their constituents, Chemical Society Reviews, 22 (1993) 255-267.

Downloads

Publicado

2022-06-30

Como Citar

GOMES, Débora Ilario da Silva; PAES, Lilian Weitzel Coelho. Estudo Teórico da Interação entre o Íon Metálico Cd2+ com as Bases Isoladas de ADN. Exatas Online, [S. l.], v. 13, n. 1, p. 1–13, 2022. DOI: 10.22481/exon.v13i1.20559. Disponível em: https://periodicos2.uesb.br/exon/article/view/20559. Acesso em: 2 out. 2026.