AVALIAÇÃO DE MÉTODOS QUÍMICO-QUÂNTICOS PARA A PREDIÇÃO DE PROPRIEDADES ELETRÔNICAS E ESTRUTURAIS
DOI:
https://doi.org/10.22481/exon.v10i2.20479Palavras-chave:
Química Computacional, Interações Não Covalentes, Entalpia de Reação e de Formação, Métodos Semiempíricos Quânticos, Métodos ab initio, DFTResumo
O desenvolvimento da química computacional ocorreu, sobretudo, nos últimos 40-50 anos paralelamente ao desenvolvimento dos computadores. Dada a dimensão assumida pela química computacional nos dias atuais, é bastante comum a ocorrência de trabalhos em que a teoria complementa o experimento. Dessa forma, a teoria acaba fornecendo informações valiosas para o entendimento de fenômenos complicados de serem explicados apenas com base na observação. Em decorrência da vastidão de níveis de teoria existentes, esse artigo de revisão tem por objetivo apresentar, descrever e discutir a aplicação de diferentes tipos de métodos computacionais para estudar os mais variados problemas voltados à química. No artigo é feita uma descrição bastante breve sobre os diferentes níveis de teoria, apresentando quando necessário, as equações básicas que são pertinentes para o seu entendimento. Através de um levantamento bibliográfico atualizado, é possível obter informações importantes sobre quais métodos utilizar em determinadas situações. Dentre os dados que serão discutidos, ênfase é dada em entalpia de formação e de isomerização de sistema ligados covalentemente ou por interações não covalentes.
Downloads
Referências
Young, D.C., Computational Chemistry: A Practical Guide for Applying Techniques to Real-World Problems. 2001: John Wiley & Sons. 370.
Lewars, E.G., Computational Chemistry: Introduction to the Theory and Applications of Molecular and Quantum Mechanics2010: Springer.
Borden, W.T., Current Applications of Computational Chemistry in JACS-Molecules, Mechanisms, and Materials. Journal of the American Chemical Society, 2011. 133(38): p. 14841-14843.
Neese, F., et al., Accurate Theoretical Chemistry with Coupled Pair Models. Accounts of Chemical Research, 2009. 42(5): p. 641-648.
Schwabe, T., R. Huenerbein, and S. Grimme, Large Molecules - Small Energies: Challenges for Contemporary Quantum Chemistry. Synlett, 2010(10): p. 1431-1441.
Praveen, P.L. and D.P. Ojha, Structure and electronic absorption spectra of nematogenic alkoxycinnamic acids - a comparative study based on semiempirical and DFT methods. Journal of Molecular Modeling, 2012. 18(4): p. 1513-1521.
Zhao, X.Y., et al., Structural Assignment of 6-Oxy Purine Derivatives through Computational Modeling, Synthesis, X-ray Diffraction, and Spectroscopic Analysis. Journal of Physical Chemistry B, 2010. 114(20): p. 6968-6972.
Kong, J., P.V. Schleyer, and H.S. Rzepa, Successful Computational Modeling of Isobornyl Chloride Ion-Pair Mechanisms. Journal of Organic Chemistry, 2010. 75(15): p. 5164-5169.
Bae, Y.S., et al., Strategies for Characterization of Large-Pore Metal-Organic Frameworks by Combined Experimental and Computational Methods. Chemistry of Materials, 2009. 21(20): p. 4768-4777.
Nakamura, T., A. Takegami, and M. Abe, Generation and Intermolecular Trapping of 1,2-Diaza-4-silacyclopentane-3,5-diyls in the Denitrogenation of 2,3,5,6-Tetraaza-7-silabicyclo 2.2.1 hept-2-ene: An Experimental and Computational Study. Journal of Organic Chemistry, 2010. 75(6): p. 1956-1960.
de Souza, M.A.F., et al., Selectivity and Mechanisms Driven by Reaction Dynamics: The Case of the Gas-Phase OH-+CH3ONO2 Reaction. Journal of the American Chemical Society, 2012. 134(46): p. 19004-19010.
Mu, X.J., et al., Experimental and Computational Studies Reveal an Alternative Supramolecular Structure for Fmoc-Dipeptide Self-Assembly. Biomacromolecules, 2012. 13(11): p. 3562-3571.
Duart, M.J., et al., New potential antihistaminic compounds. Virtual combinatorial chemistry, computational screening, real synthesis, and pharmacological evaluation. Journal of Medicinal Chemistry, 2005. 48(4): p. 1260-1264.
Szabo, A. and N.S. Ostlund, Modern Quantum Chemistry: Introduction to Advanced Electronic Structure Theory1996: Dover Publications, Incorporated.
Cramer, C.J., Essentials of Computational Chemistry: Theories and Models. 2 ed2004, New Yorks: Jonh Wiley & Sons. 596.
Simas, A.M. and G.B. Rocha, Métodos Semi-empíricos de Estrutura Eletrônica em Química Quântica. In Métodos de Química Teórica E Modelagem MolecularNelson H. Morgon; Kaline Coutinho. (Org.). Métodos de Química Teórica e Modelagem Molecular2007, São Paulo, SP: Editora Livraria da Física.
Jensen, F., Introduction to Computational Chemistry1999, New York: John Wiley & Sons. 429.
Alcácer, L., Introdução à Química Quântica Computacional2007, Portugal: Ist Press.
Roothaan, C.C.J., A Study of 2-Center Integrals Useful in Calculations on Molecular Structure.1. Journal of Chemical Physics, 1951. 19(12): p. 1445-1458.
Møller, C. and M.S. Plesset, Note on an Approximation Treatment for Many-Electron Systems. Physical Review, 1934. 46(7): p. 618-622.
Reynolds, C.H., Semiempirical MO methods: the middle ground in molecular modeling. Theochem-Journal of Molecular Structure, 1997. 401(3): p. 267-277.
Stewart, J.J.P., Rewiews in Computational Chemistry, Ed. K. B. Lipkowitz and D. B. Boyd Vol. Vol. 1. 1990, New York: VCH Publishing.
Pople, J.A., D.P. Santry, and G.A. Segal, Approximate Self-Consistent Molecular Orbital Theory. I. Invariant Procedures. Journal of Chemical Physics, 1965. 43(10): p. S129-+.
Pople, J.A. and G.A. Segal, Approximate Self-Consistent Molecular Orbital Theory .2. Calculations with Complete Neglect of Differential Overlap. Journal of Chemical Physics, 1965. 43(10): p. S136-+.
Pople, J.A. and G.A. Segal, Approximate Self-Consistent Molecular Orbital Theory. 3. CNDO Results for AB2 and AB3 Systems. Journal of Chemical Physics, 1966. 44(9): p. 3289-&.
Pople, J.A., D.l. Beveridg, and P.A. Dobosh, Approximate Self-consistent Molecular-Orbital Theory. 5. Intermediate Neglect of Differential Overlap. Journal of Chemical Physics, 1967. 47(6): p. 2026-&.
Gordon, M.S. and J.A. Pople, Approximate Self-Consistent Molecular-Orbital Theory. 6. INDO Calculated Equilibrium Geometries. Journal of Chemical Physics, 1968. 49(10): p. 4643-&.
Santry, D.P. and G.A. Segal, Approximate Self-Consistent Molecular Orbital Theory. 4. Calculations on Molecules Including Elements Sodium through Chlorine. Journal of Chemical Physics, 1967. 47(1): p. 158-&.
Leach, A.A., Molecular Modelling Principles and Aplications1996, London: Longman.
Baird, N.C. and M.J.S. Dewar, Round States of Sigma-Bonded Molecules. 4. MINDO Method and its Application to Hydrocarbons. Journal of Chemical Physics, 1969. 50(3): p. 1262-&.
Ridley, J.E. and M.C. Zerner, Triplet-States Via Intermediate Neglect of Differential Overlap - Benzene, Pyridine and Diazines. Theoretica Chimica Acta, 1976. 42(3): p. 223-236.
Dewar, M.J.S. and Haselbac.E, Ground States of Sigma-Bonded Molecules. 9. MINDO-2 Method. Journal of the American Chemical Society, 1970. 92(3): p. 590-+.
Bingham, R.C., M.J.S. Dewar, and D.H. Lo, Ground-States of Molecules. 25. MINDO-3 - Improved Version of MINDO Semiempirical SCF-MO Method. Journal of the American Chemical Society, 1975. 97(6): p. 1285-1293.
Dewar, M.J.S. and W. Thiel, Ground-States of Molecules. 38. MNDO Method - Approximations and Parameters. Journal of the American Chemical Society, 1977. 99(15): p. 4899-4907.
Dewar, M.J.S., et al., The Development and Use of Quantum-Mechanical Molecular-models. 76. AM1 - A New General-Purpose Quantum-Mechanical Molecular-Model. Journal of the American Chemical Society, 1985. 107(13): p. 3902-3909.
Stewart, J.J.P., Optimization of Parameters for Semiempirical Methods. 1. Method. Journal of Computational Chemistry, 1989. 10(2): p. 209-220.
Stewart, J.J.P., Optimization of Parameters for Semiempirical Methods. 2. Applications. Journal of Computational Chemistry, 1989. 10(2): p. 221-264.
Rocha, G.B., et al., RM1: A reparameterization of AM1 for H, C, N, O, P, S, F, Cl, Br, and I. Journal of Computational Chemistry, 2006. 27(10): p. 1101-1111.
Stewart, J.J.P., Optimization of parameters for semiempirical methods V: Modification of NDDO approximations and application to 70 elements. Journal of Molecular Modeling, 2007. 13(12): p. 1173-1213.
Stewart, J.J.P., Optimization of parameters for semiempirical methods VI: more modifications to the NDDO approximations and re-optimization of parameters. Journal of Molecular Modeling, 2013. 19(1): p. 1-32.
Weber, W. and W. Thiel, Orthogonalization corrections for semiempirical methods. Theoretical Chemistry Accounts, 2000. 103(6): p. 495-506.
Kollmar, C. and M.C. Bohm, An Analysis of the Zero Differential-Overlap Approximation - Towards An Improved Semiempirical MO Method Beyond It. Theoretica Chimica Acta, 1995. 92(1): p. 13-47.
Kryachko, E.S. and E.V. Ludeña, Energy Density Functional Theory of Many-Electrons Systems1990, Dordrecht: Kuwer Academic Publishers.
Hohenberg, P. and W. Kohn, Inhomogeneous Electron Gas. Physical Review B, 1964. 136(3B): p. B864-&.
Kohn, W. and L.J. Sham, Self-Consistent Equations Including Exchange and Correlation Effects. Physical Review, 1965. 140(4A): p. 1133-&.
Sham, L.J. and W. Kohn, 1-Particle Properties of an Inhomogeneous Interacting Electron Gas. Physical Review, 1966. 145(2): p. 561-&.
Sholl, D.S. and J.A. Steckel, Density Functional Theory: A Practical Introduction2009, New Jersey: John Wiley & Sons.
Capelle, K., A bird's-eye view of density-functional theory. Brazilian Journal of Physics, 2006. 36(4A): p. 1318-1343.
Lee, C.T., W.T. Yang, and R.G. Parr, Development of the Colle-Salvetti Correlation-Energy Formula into a Functional of the Electron-Density. Physical Review B, 1988. 37(2): p. 785-789.
Grimme, S., Accurate Description of Van Der Waals Complexes by Density Functional Theory Including Empirical Corrections. Journal of Computational Chemistry, 2004. 25(12): p. 1463-1473.
McNamara, J.P. and I.H. Hillier, Semi-Empirical Molecular Orbital Methods Including Dispersion Corrections for the Accurate Prediction of the Full Range of Intermolecular Interactions in Biomolecules. Physical Chemistry Chemical Physics, 2007. 9(19): p. 2362-2370.
Jurecka, P., et al., Benchmark Database of Accurate (MP2 And CCSD(T) Complete Basis Set Limit) Interaction Energies of Small Model Complexes, DNA Base Pairs, and Amino Acid Pairs. Physical Chemistry Chemical Physics, 2006. 8(17): p. 1985-1993.
Rezac, J., et al., Semiempirical Quantum Chemical PM6 Method Augmented by Dispersion and H-Bonding Correction Terms Reliably Describes Various Types of Noncovalent Complexes. Journal of Chemical Theory and Computation, 2009. 5(7): p. 1749-1760.
Korth, M., et al., A Transferable H-Bonding Correction for Semiempirical Quantum-Chemical Methods. Journal of Chemical Theory and Computation, 2010. 6(1): p. 344-352.
Korth, M., Third-Generation Hydrogen-Bonding Corrections for Semiempirical QM Methods and Force Fields. Journal of Chemical Theory and Computation, 2010. 6(12): p. 3808-3816.
Rezac, J. and P. Hobza, Advanced Corrections of Hydrogen Bonding and Dispersion for Semiempirical Quantum Mechanical Methods. Journal of Chemical Theory and Computation, 2012. 8(1): p. 141-151.
Rezac, J., K.E. Riley, and P. Hobza, S66: A Well-balanced Database of Benchmark Interaction Energies Relevant to Biomolecular Structures. Journal of Chemical Theory and Computation, 2011. 7(8): p. 2427-2438.
Grimme, S., et al., A Consistent and Accurate Ab Initio Parametrization of Density Functional Dispersion Correction (DFT-D) for the 94 Elements H-Pu. Journal of Chemical Physics, 2010. 132(15).
Komatsu, K., M. Murata, and Y. Murata, Encapsulation of molecular hydrogen in fullerene C 60 by organic synthesis. Science, 2005. 307(5707): p. 238-240.
Kurotobi, K. and Y. Murata, A Single Molecule of Water Encapsulated in Fullerene C-60. Science, 2011. 333(6042): p. 613-616.
Chen, Z.F. and W. Thiel, Performance of semiempirical methods in fullerene chemistry: relative energies and nucleus-independent chemical shifts. Chemical Physics Letters, 2003. 367(1-2): p. 15-25.
Xu, L., W. Cai, and X. Shao, Performance of the semiempirical AM1, PM3, MNDO, and tight-binding methods in comparison with DFT method for the large fullerenes C-116-C-120. Journal of Molecular Structure-Theochem, 2007. 817(1-3): p. 35-41.
Rayne, S. and K. Forest, Gas phase isomerization enthalpies of organic compounds: A semiempirical, density functional theory, and ab initio post-Hartree-Fock theoretical study. Journal of Molecular Structure-Theochem, 2010. 948(1-3): p. 102-107.
Markovic, Z., et al., PM6 and DFT study of free radical scavenging activity of morin. Food Chemistry, 2012. 134(4): p. 1754-1760.
Stewart, J.J.P., Comparison of the accuracy of semiempirical and some DFT methods for predicting heats of formation. Journal of Molecular Modeling, 2004. 10(1): p. 6-12.
Budyka, M.F. and I.V. Oshkin, Comparative Semiempirical and DFT Study of Styrylnaphthalenes and Styrylquinolines and Their Photocyclization Products. International Journal of Quantum Chemistry, 2011. 111(14): p. 3673-3680.
Tirado-Rives, J. and W.L. Jorgensen, Performance of B3LYP density functional methods for a large set of organic molecules. Journal of Chemical Theory and Computation, 2008. 4(2): p. 297-306.
Frison, G. and G. Ohanessian, A comparative study of semiempirical, ab initio, and DFT methods in evaluating metal-ligand bond strength, proton affinity, and interactions between first and second shell ligands in Zn-biomimetic complexes. Journal of Computational Chemistry, 2008. 29(3): p. 416-433.
Wachters, A.J., Gaussian Basis Set for Molecular Wavefunctions Containing Third-Row Atoms. Journal of Chemical Physics, 1970. 52(3): p. 1033-&.
Derosa, P.A., A Combined Semiempirical-DFT Study of Oligomers Within the Finite-Chain Approximation, Evolution from Oligomers to Polymers. Journal of Computational Chemistry, 2009. 30(8): p. 1220-1228.
Lehn, J.M., Perspectives in Supramolecular Chemistry - from Molecular Recognition Towards Molecular Information-Processing and Self-Organization. Angewandte Chemie-International Edition in English, 1990. 29(11): p. 1304-1319.
Balzani, V., et al., From a Molecular to a Supramolecular Photochemistry. Coordination Chemistry Reviews, 1993. 125(1-2): p. 75-88.
Newcomb, T.P., et al., Designed Synthesis of a radical Cation Salt of Ni(TMP) - Structural, Magnetic, and Charge-Transport Properties of bis 5,10,15,20-tetramethylporphyrinato)nickel(ii) hexafluorophosphate. Journal of the American Chemical Society, 1989. 111(18): p. 7078-7084.
Hobza, P. and K. Muller-Dethlefs, Non-Covalent Interactions: RSC Theoretical and Computational Chemistry Series2009, Cambridge: The Royal Society of Chemistry.
Wolff, M.E., Burger's medicinal chemistry and drug discovery1995, Nova Iorque: John Wiey & Sons.
Taylor, J.B. and P.D. Kennewell, Introductory medicinal chemistry1981, Nova Iorque: John Wiley & Sons.
Rossi, M., et al., Secondary Structure of Ac-Ala(n)-LysH(+) Polyalanine Peptides (n=5, 10, 15) in Vacuo: Helical or Not? Journal of Physical Chemistry Letters, 2010. 1(24): p. 3465-3470.
Hua, S., et al., Cooperativity in Long alpha- and 3(10)-Helical Polyalanines: Both Electrostatic and van der Waals Interactions Are Essential. Journal of Physical Chemistry B, 2011. 115(39): p. 11462-11469.
Tkatchenko, A., et al., Unraveling the Stability of Polypeptide Helices: Critical Role of van der Waals Interactions. Physical Review Letters, 2011. 106(11).
Lupan, A., et al., Performance comparison of computational methods for modeling alpha-helical structures. Journal of Molecular Modeling, 2013. 19(1): p. 193-203.
Korth, M. and W. Thiel, Benchmarking Semiempirical Methods for Thermochemistry, Kinetics, and Noncovalent Interactions: OMx Methods Are Almost As Accurate and Robust As DFT-GGA Methods for Organic Molecules. Journal of Chemical Theory and Computation, 2011. 7(9): p. 2929-2936.
Goerigk, L. and S. Grimme, Efficient and Accurate Double-Hybrid-Meta-GGA Density Functionals-Evaluation with the Extended GMTKN30 Database for General Main Group Thermochemistry, Kinetics, and Noncovalent Interactions. Journal of Chemical Theory and Computation, 2011. 7(2): p. 291-309.
Risthaus, T. and S. Grimme, Benchmarking of London Dispersion-Accounting Density Functional Theory Methods on Very Large Molecular Complexes. Journal of Chemical Theory and Computation, 2013. 9(3): p. 1580-1591.
Hobza, P., Calculations on Noncovalent Interactions and Databases of Benchmark Interaction Energies. Accounts of Chemical Research, 2012. 45(4): p. 663-672.
Hostas, J., J. Rezac, and P. Hobza, On the performance of the semiempirical quantum mechanical PM6 and PM7 methods for noncovalent interactions. Chemical Physics Letters, 2013. 568: p. 161-166.
Downloads
Publicado
Como Citar
Edição
Seção
Licença
Copyright (c) 2019 Exatas Online

Este trabalho está licenciado sob uma licença Creative Commons Attribution 4.0 International License.
Você é livre para:
Compartilhar - copia e redistribui o material em qualquer meio ou formato; Adapte - remixe, transforme e construa a partir do material para qualquer propósito, mesmo comercialmente. Esta licença é aceitável para Obras Culturais Livres. O licenciante não pode revogar essas liberdades, desde que você siga os termos da licença.
Sob os seguintes termos:
Atribuição - você deve dar o crédito apropriado, fornecer um link para a licença e indicar se alguma alteração foi feita. Você pode fazer isso de qualquer maneira razoável, mas não de uma forma que sugira que você ou seu uso seja aprovado pelo licenciante.
Não há restrições adicionais - Você não pode aplicar termos legais ou medidas tecnológicas que restrinjam legalmente outros para fazer qualquer uso permitido pela licença.


